Variant Classifications

Creating Classifications

Create classifications as follows:

Create from existing variant

When you click “New Classification” from the allele or variant details page, you are shown a form to pick the transcript and sample:

../_images/classification_choose_transcript.png

A number of fields are auto-populated from annotation and sample information (data from VCF record, patient phenotype etc).

Classifications made against a sample are linked from the bottom of the VCF and sample pages.

Variants created from the external API are not auto-populated from annotation.

Editing

See the Classification Form.

Configuring Fields

An administrator can add/remove EvidenceKeys which are used to create fields.

They can also hide visible fields on a per-lab basis.