VariantGrid

Overview:

  • Intro
  • Technical Attributions

Analysis:

  • Analysis Intro
  • Analysis Nodes
  • Analysis - advanced
  • Variant Tagging
  • Analysis Classification
  • Analysis - templates
  • Karyomapping

Annotations:

  • Annotation Details
  • Variant Details
  • Transcript Choice

Data:

  • Uploading Data
  • Managing data
  • Somatic data
  • Mutational signatures
  • VCF / Samples
  • Relatedness
  • Ancestry
  • Search
  • Zygosity counts

Genes:

  • Genes
  • Gene Symbol page
  • Gene Lists
  • Gene Grid
  • Gene Coverage

Path Tests:

  • Pathology Tests
  • Test Ordering

Patients:

  • Patients
  • Phenotypes
  • Cohorts
  • Trios
  • Pedigree

Sequencing:

  • Sequencing Runs

Settings:

  • User Details
  • Customise columns
  • IGV integration

Classification:

  • Classifications
  • Classification Form
  • Classification Sharing
  • Classification Flags
  • Classification Report
  • Classification REDCap
VariantGrid
  • Search
  • View page source

Search

Enter text into the search box in the top right hand corner and press enter or click Go.

../_images/search.png

This searches on the default build in your user settings.

If there is only one result, it automatically jumps to that page, otherwise it displays the results.

Click on the Go button without entering anything in the search box to visit the search page, where you can select which genome builds to search on.

Example inputs:

Name Example
Locus chr1:169519049
Variant "1:169519049 T>C" or "1-169519049-T-C"
Variant (id) v1001
ClinGenAllele CA285410130
dbSNP ID rs6025
HGVS "NM_001080463.1:c.5972T>A", "NM_000492.3(CFTR):c.1438G>T", "NC_000007:g.117199563G>T"
Gene GATA2, ENSG00000179348
Transcript NM_001080463, NM_001080463.2
Classification The Lab Record ID of the record vc1545
Sample hiseq_sample_2 (case insensitive search match in name)
Patient "Last, First" or "First" or "Last"
Flowcell 160513_NB501009_0029_AH3FFJBGXY

For HGVS, if no transcript version is provided, the most recent is used.

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